PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02930.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 1069aa    MW: 122813 Da    PI: 8.8354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02930.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.7e-12431181799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +p  f+++ +++    +  +l  +sg  W+v++   kk++ ++l +GW +F  +n +   Df++F+++g ++f  +v++f k
  Vang0010ss02930.2  43 KVPEGFLKHLNED---FQNAVLIGPSGDNWQVTI--LKKGNNIYLYNGWPQFLTDNSVMLDDFLLFTYHGGNCF--HVQIFGK 118
                        6788888444433...3479**************..*********************************99***..***9987 PP

2B361.81.2e-19205298499
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +t+ +v  ++ l +  +fa++h   +e+ k+++l +++g+ Wev +++  +++++ + +t+GW +Fv++n+L  gD++vF+l++  + +l 
  Vang0010ss02930.2 205 LMTKCNVEDHCTLPIATEFARKHI--PETVKQIILWNTEGKFWEVVVTWfgCQNKRYTRFTTGWGRFVRDNRLMRGDTCVFELED--QNHLS 292
                        677889999**************4..334457*****************8877777799***********************965..66679 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v++fr+
  Vang0010ss02930.2 293 VHIFRT 298
                        **9996 PP

3B349.57.5e-16346432899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++v+  ++  +pk+f+++ +++  +s ++   ++sg +W+v +   kk++++++++GW +Fv +n +   D+++F+++g+++f  +v++f+k
  Vang0010ss02930.2 346 PSVFCDNLQKVPKEFLKKLNED-LSSNEVLSSSSSGDKWQVSV--LKKGNEVYMQNGWPKFVTDNSIVLHDVLLFTYHGENCF--HVQIFDK 432
                        5778888889******999655.5677999999**********..**********************************9***..*****98 PP

4B347.24e-156617351797
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +lp +f++++gg+   s  +tl  ++g +W+v l  +k +++y++++GW+eF +   + +g  +vF+++g+s+f  +v+vf
  Vang0010ss02930.2 661 RLPDDFMRKYGGE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGF--NVHVF 735
                        79********887..7779***************..**********************************9999..77777 PP

5B353.25.4e-179391029498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3    4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92  
                         vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr ++    l++GW eF  +n+L egD++vF+l + +e  l
  Vang0010ss02930.2  939 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRVGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 1023
                         78899******************877743...59**************777776..55***********************998888889 PP

                         EEEEE- CS
                 B3   93 vvkvfr 98  
                          v++fr
  Vang0010ss02930.2 1024 QVTIFR 1029
                         999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.54727119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-1727119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1628120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-1030116No hitNo description
SMARTSM010198.2E-1132119IPR003340B3 DNA binding domain
PfamPF023624.2E-943118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23194298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-23197301IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-9202299IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381202299IPR003340B3 DNA binding domain
PfamPF023622.9E-16205298IPR003340B3 DNA binding domain
CDDcd100176.77E-18206297No hitNo description
Gene3DG3DSA:2.40.330.107.8E-19315434IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929339433IPR003340B3 DNA binding domain
SMARTSM010191.4E-8342433IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-17347434IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-13349433IPR003340B3 DNA binding domain
CDDcd100179.25E-9356431No hitNo description
Gene3DG3DSA:2.40.330.101.3E-10524602IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11525601IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.854532626IPR003340B3 DNA binding domain
SMARTSM010193.4E-9657738IPR003340B3 DNA binding domain
CDDcd100171.11E-14661736No hitNo description
PfamPF023622.0E-12661735IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-18661736IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-19661736IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.843662738IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-239281029IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-239291030IPR015300DNA-binding pseudobarrel domain
CDDcd100176.68E-209341029No hitNo description
SMARTSM010192.3E-149361031IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6069361031IPR003340B3 DNA binding domain
PfamPF023625.5E-159391029IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MRDFSFYQKA LIVQGNGREM WQMDYYRGNP VFFVIINNSK LQKVPEGFLK HLNEDFQNAV  60
LIGPSGDNWQ VTILKKGNNI YLYNGWPQFL TDNSVMLDDF LLFTYHGGNC FHVQIFGKNG  120
LERLCFKQTR QDQVLIPSLV RTKKNTHRRT SSSPFLHQAK SYKKGLSFSS KFSFSKLKSS  180
VKIESSEACY LADSFTSRNP HWKHLMTKCN VEDHCTLPIA TEFARKHIPE TVKQIILWNT  240
EGKFWEVVVT WFGCQNKRYT RFTTGWGRFV RDNRLMRGDT CVFELEDQNH LSVHIFRTGF  300
CAPKFLMAGG VKKYPLFFTI FVPEQHSQTM CCYHSLFMVI WFQHYPSVFC DNLQKVPKEF  360
LKKLNEDLSS NEVLSSSSSG DKWQVSVLKK GNEVYMQNGW PKFVTDNSIV LHDVLLFTYH  420
GENCFHVQIF DKNGVERLCL KETTQEKKDM PCRNKGFIFT GSETMKTGQK QTATPSLART  480
KKKKERHFSP GKSHQEDLSL PKDFPAPQHS VEIESSEALK LAESFTSSKP YWKHLMTKCH  540
VEGRCILPIA TKFARKYIPE EVKQIHIGNS EGTLWKVHVS WSKGYAHFST GWANLVRDNK  600
LMRAEESGDW RIGSDGEVDL KDNDAPFFPQ ASSTLHSPNQ TTEDWLSGCE EKSENFFWDK  660
RLPDDFMRKY GGELSPIVTL SVPDGSVWRV GLKKADNKYW FRDGWQEFIQ HYSIGVGYLL  720
VFRYEGKSGF NVHVFNLATS EINYQSAIRC SNEGPHFANL LKFFEEIDDE DSIEILDSSP  780
SHLAPSSLQN RVLACSVDKM SPAKSYTPPA LQNLFNGSKL NSINWGEGGD AHCSKSANSL  840
DDRFTRDIGV QFNAVEFKRS TEELKLRASM EERMKKTARK KRKSDGQEAS AEQEEEVEMR  900
FRFYESASAR KRTVTAEERE RAISAAKAFE PANPFCRVVL RPSYLYRGCI MYLPSCFAEK  960
HLNGVSGFIK LQISNGRQWP VRCLYRVGRA KLSQGWFEFS LENNLGEGDV CVFELLRMKE  1020
VVLQVTIFRI TEEVGMLKPP PSQQNQNMSS AKLLSTPLQQ HLSSTQMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-67902103415146B3 domain-containing transcription factor VRN
4i1k_B1e-67902103415146B3 domain-containing transcription factor VRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478484RTKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-106B3 family protein